BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017H02SP1|AL427217
(640 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1007 0.0
>3x_Contig1793
Length = 40499
Score = 1007 bits (505), Expect = 0.0
Identities = 606/639 (94%), Gaps = 3/639 (0%)
Strand = Plus / Minus
Query: 3 ttaccttcagcaatggcagcagcttccttggtcaatctttcatttttttcagcggcagta 62
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 36141 ttaccttcagcaatggcagcagcttccttggtcaatctttcctttttttcagcggcagtt 36082
Query: 63 tctgaggctgtacttcttcaacaacttgaaggtttcarmagcagtgtttctgtccaaagt 122
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 36081 tctg-ggctgtacttcttcaacaacttgaaggtttcagcagcagtgtttctgtccaaagt 36023
Query: 123 gttttggaattgagcaatggatggaggaacctttaatctgatgctcaagatcttcttttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36022 gttttggaattgagcaatggatggaggaacctttaatctgatgctcaagatcttcttttg 35963
Query: 183 tctttgcaatctgacgtattctggccatttcacgtatctagacaagtttctctttggttg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35962 tctttgcaatctgacgtattctggccatttcacgtatctagacaagtttctctttggttg 35903
Query: 243 aatggcttggccaataccgaagtttcttggagaagacttggtcaatgggttagacttctt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35902 aatggcttggccaataccgaagtttcttggagaagacttggtcaatgggttagacttctt 35843
Query: 303 ggcagaagcagccttggatgctaatggagctggagcgaccttcttggatggagccattgt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35842 ggcagaagcagccttggatgctaatggagctggagcgaccttcttggatggagccattgt 35783
Query: 363 gaattgattggttgatgcttgtcgatgtggcaaaagaaatccagtggtaatagtagaagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35782 gaattgattggttgatgcttgtcgatgtggcaaaagaaatccagtggtaatagtagaagt 35723
Query: 423 cagatccagaaagtaaacaattaacgtttgtatattatttttttttatataaaggttatt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35722 cagatccagaaagtaaacaattaacgtttgtatattatttttttttatataaaggttatt 35663
Query: 483 cctccgattagagaaagtgacaaactgaagttcgagtcccgtaacgtacg-ysgaaaaaa 541
||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||
Sbjct: 35662 cctccgattagagaaagtgacaaactgaagttcgagt-gggtaaggtaggctggaaaaaa 35604
Query: 542 aaaaatcgtaaaagtttgaaataaaaaaatgaattgaatatataaaaaaatttataaatt 601
|| | |||| ||||||||||||| ||| |||| ||||||| || |||| | |||
Sbjct: 35603 ccaactggtaacagtttgaaataaacccatgcattgcatatatacaaccatttctccatt 35544
Query: 602 tsgtaattattttttgaaaattgaaaaatattataatta 640
| ||||||||||||||||||||||| | | |||||||||
Sbjct: 35543 tggtaattattttttgaaaattgaacactcttataatta 35505
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,637
Number of Sequences: 1807
Number of extensions: 13637
Number of successful extensions: 294
Number of sequences better than 1.0e-20: 1
length of query: 640
length of database: 10,358,551
effective HSP length: 16
effective length of query: 624
effective length of database: 10,329,639
effective search space: 6445694736
effective search space used: 6445694736
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)